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1

Mechanisms of DNA Methyltransferase Recruitment in Mammals

Laisné, Marthe, Gupta, Nikhil, Kirsh, Olivier, Pradhan, Sriharsa, Defossez, Pierre-Antoine

Journal:

Year:

2018

Language:

english

File:

PDF, 1.52 MB

english, 2018

2

The microtubule-associated histone methyltransferase SET8, facilitated by transcription factor LSF, methylates Î±-tubulin

Chin, Hang Gyeong, Esteve, Pierre-Olivier, Ruse, Cristian, Lee, Jiyoung, Schaus, Scott E, Pradhan, Sriharsa, Hansen, Ulla

Journal:

Journal of Biological Chemistry

Year:

2020

File:

PDF, 2.82 MB

2020

3

Herbicide resistance from a divided EPSPS protein: the split Synechocystis DnaE intein as an in vivo affinity domain

Lixin Chen, Sriharsa Pradhan, Thomas C. Evans Jr.

Journal:

Year:

2001

Language:

english

File:

PDF, 1.09 MB

english, 2001

4

High-Resolution Enzymatic Mapping of Genomic 5-Hydroxymethylcytosine in Mouse Embryonic Stem Cells

Sun, Zhiyi, Terragni, Jolyon, Borgaro, Janine G., Liu, Yiwei, Yu, Ling, Guan, Shengxi, Wang, Hua, Sun, Dapeng, Cheng, Xiaodong, Zhu, Zhenyu, Pradhan, Sriharsa, Zheng, Yu

Journal:

Year:

2013

Language:

english

File:

PDF, 1.38 MB

english, 2013

5

Evaluation of UDP-GlcN Derivatives for Selective Labeling of 5-(Hydroxymethyl)cytosine

Dai, Nan, Bitinaite, Jurate, Chin, Hang-Gyeong, Pradhan, Sriharsa, Corrêa, Ivan R.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.30 MB

english, 2013

6

Universal NicE-seq for high-resolution accessible chromatin profiling for formaldehyde-fixed and FFPE tissues

Chin, Hang Gyeong, Sun, Zhiyi, Vishnu, Udayakumar S., Hao, Pengying, Cejas, Paloma, Spracklin, George, EstÃ¨ve, Pierre-Olivier, Xu, Shuang-yong, Long, Henry W., Pradhan, Sriharsa

Journal:

Clinical Epigenetics

Year:

2020

File:

PDF, 2.58 MB

2020

7

Association of 5-hydroxymethylation and 5-methylation of DNA cytosine with tissue-specific gene expression

Ponnaluri, V. K. Chaithanya, Ehrlich, Kenneth C., Zhang, Guoqiang, Lacey, Michelle, Johnston, Douglas, Pradhan, Sriharsa, Ehrlich, Melanie

Journal:

Year:

2016

Language:

english

File:

PDF, 853 KB

english, 2016

8

Mammalian DNA (Cytosine-5) Methyltransferase Mechanisms and RNA-Mediated Inhibition for Future Therapies

Zhang, Guoqiang, Esteve, Pierre-Olivier, Chin, Hang, Pradhan, Sriharsa

Journal:

Epigenetic Diagnosis & Therapy

Year:

2015

Language:

english

File:

PDF, 458 KB

english, 2015

9

Allosteric Activator Domain of Maintenance Human DNA (Cytosine-5) Methyltransferase and Its Role in Methylation Spreading

Pradhan, Sriharsa, Estève, Pierre-Olivier

Journal:

Year:

2003

Language:

english

File:

PDF, 204 KB

english, 2003

10

Small RNA-mediated DNA (cytosine-5) methyltransferase 1 inhibition leads to aberrant DNA methylation

Zhang, Guoqiang, Estève, Pierre-Olivier, Chin, Hang Gyeong, Terragni, Jolyon, Dai, Nan, Corrêa, Ivan R., Pradhan, Sriharsa

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.07 MB

english, 2015

11

A novel requirement for DROSHA in maintenance of mammalian CG methylation

Stathopoulou, Athanasia, Chhetri, Jyoti B., Ambrose, John C., Estève, Pierre-Olivier, Ji, Lexiang, Erdjument-Bromage, Hediye, Zhang, Guoqiang, Neubert, Thomas A., Pradhan, Sriharsa, Herrero, Javier, S

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 35 KB

english, 2017

12

S -adenosylhomocysteine Hydrolase Participates in DNA Methylation Inheritance

Ponnaluri, V.K. Chaithanya, Estève, Pierre-Olivier, Ruse, Cristian I., Pradhan, Sriharsa

Journal:

Journal of Molecular Biology

Year:

2018

Language:

english

File:

PDF, 1.88 MB

english, 2018

13

Sequence Specificity and Role of Proximal Amino Acids of the Histone H3 Tail on Catalysis of Murine G9a Lysine 9 Histone H3 Methyltransferase

Chin, Hang Gyeong, Pradhan, Mihika, Estève, Pierre-Olivier, Patnaik, Debasis, Evans, Thomas C., Pradhan, Sriharsa

Journal:

Year:

2005

Language:

english

File:

PDF, 427 KB

english, 2005

14

CXXC Domain of Human DNMT1 Is Essential for Enzymatic Activity

Pradhan, Mihika, Estève, Pierre-Olivier, Chin, Hang Gyeong, Samaranayke, Mala, Kim, Gun-Do, Pradhan, Sriharsa

Journal:

Year:

2008

Language:

english

File:

PDF, 3.96 MB

english, 2008

15

A refined DNA methylation detection method using MspJI coupled quantitative PCR

Petell, Christopher J., Loiseau, Gilbert, Gandy, Ryan, Pradhan, Sriharsa, Gowher, Humaira

Journal:

Analytical Biochemistry

Year:

2017

Language:

english

File:

PDF, 1.81 MB

english, 2017

16

Notch signaling genes

Terragni, Jolyon, Zhang, Guoqiang, Sun, Zhiyi, Pradhan, Sriharsa, Song, Lingyun, Crawford, Gregory E, Lacey, Michelle, Ehrlich, Melanie

Journal:

Year:

2014

Language:

english

File:

PDF, 3.13 MB

english, 2014

17

Alterations in the placental methylome with maternal obesity and evidence for metabolic regulation

Mitsuya, Kohzoh, Parker, Ashley N., Liu, Lu, Ruan, Jianhua, Vissers, Margreet C. M., Myatt, Leslie, Pradhan, Sriharsa

Journal:

Year:

2017

Language:

english

File:

PDF, 5.09 MB

english, 2017

18

Mapping of polyglutamylation in tubulins using nanoLC-ESI-MS/MS

McClung, Colleen, Chin, Hang Gyeong, Hansen, Ulla, Noren, Christopher J., Pradhan, Sriharsa, Ruse, Cristian I.

Journal:

Analytical Biochemistry

Year:

2020

File:

PDF, 3.87 MB

2020

19

5-Aza-2′-deoxycytidine and interleukin-1 cooperate to regulate matrix metalloproteinase-3 gene expression

Julie Couillard, Pierre-Olivier Estève, Sriharsa Pradhan, Yves St-Pierre

Journal:

International Journal of Cancer

Year:

2011

Language:

english

File:

PDF, 1.13 MB

english, 2011

20

Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3

Lindroth, Anders M, Shultis, David, Jasencakova, Zuzana, Fuchs, Jörg, Johnson, Lianna, Schubert, Daniel, Patnaik, Debasis, Pradhan, Sriharsa, Goodrich, Justin, Schubert, Ingo

Journal:

The EMBO Journal

Year:

2011

Language:

english

File:

PDF, 42 KB

english, 2011

21

Correction to Biochemical Characterization of Recombinant β-Glucosyltransferase and Analysis of Global 5-Hydroxymethylcytosine in Unique Genomes

Terragni, Jolyon, Bitinaite, Jurate, Zheng, Yu, Pradhan, Sriharsa

Journal:

Year:

2012

File:

PDF, 127 KB

2012

22

An insight into the various regulatory mechanisms modulating human DNA methyltransferase 1 stability and function

Kar, Swayamsiddha, Deb, Moonmoon, Sengupta, Dipta, Shilpi, Arunima, Parbin, Sabnam, Torrisani, Jérôme, Pradhan, Sriharsa, Patra, Samir Kumar

Journal:

Year:

2012

Language:

english

File:

PDF, 3.00 MB

english, 2012

23

Effect of CWG methylation on expression of plant genes

PRADHAN, Sriharsa, URWIN, Nigel A. R., JENKINS, Gareth I., ADAMS, Roger L. P.

Journal:

Biochemical Journal

Year:

1999

Language:

english

File:

PDF, 105 KB

english, 1999

24

PKC isoforms interact with and phosphorylate DNMT1

Geneviève Lavoie, Pierre-Olivier Estève, Nathalie Bibens Laulan, Sriharsa Pradhan, Yves St-Pierre

Journal:

Year:

2011

Language:

english

File:

PDF, 5.23 MB

english, 2011

25

HP1-mediated silencing targets Pol II coactivator complexes

Smallwood, Andrea, Black, Joshua C, Tanese, Naoko, Pradhan, Sriharsa, Carey, Michael

Journal:

Nature Structural and Molecular Biology

Year:

2008

Language:

english

File:

PDF, 251 KB

english, 2008

26

Structure and function of the mouse DNA methyltransferase gene: Dnmt1 shows a tripartite structure

Jean B Margot, Ana M Aguirre-Arteta, B.Viviana Di Giacco, Sriharsa Pradhan, Richard J Roberts, M.Cristina Cardoso, Heinrich Leonhardt

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 338 KB

english, 2000

27

SET7/9 mediated methylation of non-histone proteins in mammalian cells

Pradhan, Sriharsa, Chin, Hang Gyeong, Estève, Pierre-Olivier, Jacobsen, Steven E.

Journal:

Year:

2009

Language:

english

File:

PDF, 1.76 MB

english, 2009

28

Developmentally linked human DNA hypermethylation is associated with down-modulation, repression, and upregulation of transcription

Baribault, Carl, Ehrlich, Kenneth C., Ponnaluri, V. K. Chaithanya, Pradhan, Sriharsa, Lacey, Michelle, Ehrlich, Melanie

Journal:

Year:

2018

Language:

english

File:

PDF, 2.36 MB

english, 2018

29

Profiling DNA methylation patterns of zebrafish liver associated with parental high dietary arachidonic acid

Adam, Anne-Catrin, Lie, Kai Kristoffer, Whatmore, Paul, Jakt, Lars Martin, Moren, Mari, Skjærven, Kaja Helvik, Pradhan, Sriharsa

Journal:

Year:

2019

Language:

english

File:

PDF, 1.50 MB

english, 2019

30

Whole genome DNA methylation: beyond genes silencing

Tirado-Magallanes, Roberto, Rebbani, Khadija, Lim, Ricky, Pradhan, Sriharsa, Benoukraf, Touati

Journal:

Year:

2017

Language:

english

File:

PDF, 1.83 MB

english, 2017

31

The De Novo Cytosine Methyltransferase DRM2 Requires Intact UBA Domains and a Catalytically Mutated Paralog DRM3 during RNA–Directed DNA Methylation in Arabidopsis thaliana

Henderson, Ian R., Deleris, Angelique, Wong, William, Zhong, Xuehua, Chin, Hang Gyeong, Horwitz, Gregory A., Kelly, Krystyna A., Pradhan, Sriharsa, Jacobsen, Steven E., Ecker, Joseph R.

Journal:

Year:

2010

Language:

english

File:

PDF, 1.88 MB

english, 2010

32

Effect of CWG methylation on expression of plant genes

PRADHAN, Sriharsa, URWIN, Nigel A.R., JENKINS, Gareth I., ADAMS, Roger L.P.

Journal:

Biochemical Journal

Year:

1999

Language:

english

File:

PDF, 105 KB

english, 1999

33

Catalytic Properties and Kinetic Mechanism of Human Recombinant Lys-9 Histone H3 Methyltransferase SUV39H1: Participation of the Chromodomain in Enzymatic Catalysis †

Chin, Hang Gyeong, Patnaik, Debasis, Estève, Pierre-Olivier, Jacobsen, Steven E., Pradhan, Sriharsa

Journal:

Year:

2006

Language:

english

File:

PDF, 327 KB

english, 2006

34

Tissue-specific epigenetics in gene neighborhoods: myogenic transcription factor genes

Chandra, Sruti, Terragni, Jolyon, Zhang, Guoqiang, Pradhan, Sriharsa, Haushka, Stephen, Johnston, Douglas, Baribault, Carl, Lacey, Michelle, Ehrlich, Melanie

Journal:

Human Molecular Genetics

Year:

2015

Language:

english

File:

PDF, 1.22 MB

english, 2015

35

High-efficiency generation of induced pluripotent mesenchymal stem cells from human dermal fibroblasts using recombinant proteins

Chen, Fanfan, Zhang, Guoqiang, Yu, Ling, Feng, Yanye, Li, Xianghui, Zhang, Zhijun, Wang, Yongting, Sun, Dapeng, Pradhan, Sriharsa

Journal:

Stem Cell Research & Therapy

Year:

2016

Language:

english

File:

PDF, 1.83 MB

english, 2016

36

A methylation and phosphorylation switch between an adjacent lysine and serine determines human DNMT1 stability

Estève, Pierre-Olivier, Chang, Yanqi, Samaranayake, Mala, Upadhyay, Anup K, Horton, John R, Feehery, George R, Cheng, Xiaodong, Pradhan, Sriharsa

Journal:

Nature Structural and Molecular Biology

Year:

2010

Language:

english

File:

PDF, 825 KB

english, 2010

37

Mediator Links Epigenetic Silencing of Neuronal Gene Expression with X-Linked Mental Retardation

Ning Ding, Haiying Zhou, Pierre-Olivier Esteve, Hang Gyeong Chin, Seokjoong Kim, Xuan Xu, Sumy M. Joseph, Michael J. Friez, Charles E. Schwartz, Sriharsa Pradhan, Thomas G. Boyer

Journal:

Year:

2008

Language:

english

File:

PDF, 1.71 MB

english, 2008

38

Visualization and Sequencing of Accessible Chromatin Reveals Cell Cycle and Post Romidepsin Treatment Dynamics

EstÃ¨ve, Pierre-Olivier, Vishnu, Udayakumar S., Chin, Hang Gyeong, Pradhan, Sriharsa

Journal:

Journal of Molecular Biology

Year:

2020

File:

PDF, 12.13 MB

2020

39

5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells

Hume Stroud, Suhua Feng, Shannon Morey Kinney, Sriharsa Pradhan, Steven E Jacobsen

Journal:

Year:

2011

Language:

english

File:

PDF, 696 KB

english, 2011

40

Characterization of Dnmt1 Binding and DNA Methylation on Nucleosomes and Nucleosomal Arrays

Schrader, Anna, Gross, Thomas, Thalhammer, Verena, Längst, Gernot, Pradhan, Sriharsa

Journal:

Year:

2015

Language:

english

File:

PDF, 1.97 MB

english, 2015

41

IDH1/2 Mutants Inhibit TET-Promoted Oxidation of RNA 5mC to 5hmC

Xu, Qiang, Wang, Kai, Wang, Lina, Zhu, Yuting, Zhou, Guangyu, Xie, Dan, Yang, Qingkai, Pradhan, Sriharsa

Journal:

Year:

2016

Language:

english

File:

PDF, 2.38 MB

english, 2016

42

Novel purification reagents for the study of the human microbiome

George R Feehery, Eileen Dimalanta, Sriharsa Pradhan

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

43

DNA Damage-induced Down-regulation of Human Cdc25C and Cdc2 Is Mediated by Cooperation between p53 and Maintenance DNA (Cytosine-5) Methyltransferase 1

Gac, Gerald Le, Estève, Pierre-Olivier, Ferec, Claude, Pradhan, Sriharsa

Journal:

Journal of Biological Chemistry

Year:

2006

Language:

english

File:

PDF, 1015 KB

english, 2006

44

A novel requirement for DROSHA in maintenance of mammalian CG methylation

Stathopoulou, Athanasia, Chhetri, Jyoti B., Ambrose, John C., Estève, Pierre-Olivier, Ji, Lexiang, Erdjument-Bromage, Hediye, Zhang, Guoqiang, Neubert, Thomas A., Pradhan, Sriharsa, Herrero, Javier, S

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 4.14 MB

english, 2017

45

PROTEIN SPLICING ELEMENTS AND PLANTS: From Transgene Containment to Protein Purification

Evans, Thomas C., Xu, Ming-Qun, Pradhan, Sriharsa

Journal:

Annual Review of Plant Biology

Year:

2005

Language:

english

File:

PDF, 558 KB

english, 2005

46

MBD4 cooperates with DNMT1 to mediate methyl-DNA repression and protects mammalian cells from oxidative stress

Laget, Sophie, Miotto, Benoit, Chin, Hang Gyeong, Estève, Pierre-Olivier, Roberts, Richard J, Pradhan, Sriharsa, Defossez, Pierre-Antoine

Journal:

Year:

2014

Language:

english

File:

PDF, 1.96 MB

english, 2014

47

The MspJI family of modification-dependent restriction endonucleases for epigenetic studies

Devora Cohen-Karni, Derrick Xu, Lynne Apone, Alexey Fomenkov, Zhiyi Sun, Paul J. Davis, Shannon R. Morey Kinney, Megumu Yamada-Mabuchi, Shuang-yong Xu, Theodore Davis, Sriharsa Pradhan, Richard J. Rob

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.19 MB

english, 2011

48

DNA methylation and differentiation:HOXgenes in muscle cells

Tsumagari, Koji, Baribault, Carl, Terragni, Jolyon, Chandra, Sruti, Renshaw, Chloe, Sun, Zhiyi, Song, Lingyun, Crawford, Gregory E, Pradhan, Sriharsa, Lacey, Michelle, Ehrlich, Melanie

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 1.19 MB

english, 2013

49

Biochemical Characterization of Recombinant β-Glucosyltransferase and Analysis of Global 5-Hydroxymethylcytosine in Unique Genomes

Terragni, Jolyon, Bitinaite, Jurate, Zheng, Yu, Pradhan, Sriharsa

Journal:

Year:

2012

Language:

english

File:

PDF, 1.80 MB

english, 2012

50

DNA METHYLATION IN PLANTS: INVOLVEMENT OF TWO DIFFERENT METHYLTRANSFERASES

Pradhan, Sriharsa, Adams, Roger L. P.

Journal:

Biochemical Society Transactions

Year:

1994

Language:

english

File:

PDF, 112 KB

english, 1994

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